NEWS

---

cophescan 1.4.3 (2026-03-18)

• Fixed nrow check in cophe.hyp.predict
• Replaced dplyr::select_if with dplyr::select(-matches(...))
• Fixed warning and error messages
• Fixed spelling in documentation
• Updated citation

cophescan 1.4.2 (2025-07-30)

• Fixed cross-references for documentation
• Fixed formatting of messages

cophescan 1.4.1 (2024-06-11)

• Corrected cophe.susie input to accept only query trait datasets

cophescan 1.4.0 (2024-03-11)

• Set default values for fixed priors (pa and pc) in cophe.single and cophe.susie
• Updated diagnostics of MCMC chains in vignettes
• Fixed prior information added in vignette
• Submitted to CRAN

cophescan 1.3.2 (2023-10-25)

• Changed one instance of print() to message()

cophescan 1.3.1

• Changed plotting functions where querytrait and query_trait_names are now required arguments instead of optional in prepare_plot_data, get_beta, cophe_plot, cophe_heatmap
• reset global user parameters after running vignettes
• Updated vignettes

cophescan 1.3.0

• Fixed minor note from CRAN auto-check of 1.2.0

cophescan 1.2.0

• re-attempted CRAN submission but persistent note regarding access to internal functions

cophescan 1.1.0

• 1.1.0 CRAN re-submission
• Fixed warnings from CRAN auto-check of 1.0.0
• RcppArmadillo only in LinkingTo and removed from imports
• Updated vignettes

cophescan 1.0.0

• Passed local R CMD checks and tested on R 4.3.1
• Prepared package for CRAN submission

cophescan 0.1.0

• Github version
• Added a NEWS.md file to track changes to the package